This directory contains reciprocal-best netted chains for hg38-oreNil3.

 - hg38.oreNil3.rbest.net.gz: hg38-referenced recip.best net to oreNil3.
 - hg38.oreNil3.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from hg38 to oreNil3 through the recip.best net.

 - oreNil3.hg38.rbest.net.gz: oreNil3-referenced recip.best net.
 - oreNil3.hg38.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/hg38.oreNil3.rbest.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html

      Name                        Last modified      Size  Description
      Parent Directory                                 -   
      axtRBestNet/                2017-08-02 04:45    -   
      hg38.oreNil3.rbest.chain.gz 2017-08-02 00:10  3.7M  
      hg38.oreNil3.rbest.net.gz   2017-08-02 00:10  6.2M  
      md5sum.txt                  2017-08-02 00:10  244   
      oreNil3.hg38.rbest.chain.gz 2017-08-02 00:10  3.7M  
      oreNil3.hg38.rbest.net.gz   2017-08-02 00:10  6.4M