[DIR] Parent Directory

This directory contains data generated by the Bernstein/Broad lab as part of the ENCODE project.

This directory contains the subset of the Broad ChIP-seq signal tracks used in the ENCODE Integrated Regulation Tracks

Further information is available in the ENCODE Histone Modifications by Broad Institute ChIP-seq track description.

Data is RESTRICTED FROM USE in publication until the restriction date noted for the given data file.

There are two files within this directory that contain information about the downloads:
  • files.txt which is a tab-separated file with the name and metadata for each download.
  • md5sum.txt which is a list of the md5sum output for each download.
    • RESTRICTED
    until    		  FileSizeSubmitted  Details
      2009-10-05wgEncodeBroadHistoneGm12878H3k4me1StdSig.bigWig  346M  2009-01-05  dataType=ChipSeq; cell=GM12878; antibody=H3K4me1; control=std; expId=33; setType=exp; controlId=GM12878/Input/std; subId=2804; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-11-05; grant=Bernstein; lab=Broad; view=Signal; type=bigWig; dccAccession=wgEncodeEH000033; origAssembly=hg18
      2010-06-30wgEncodeBroadHistoneH1hescH3k4me1StdSig.bigWig  411M  2009-09-30  dataType=ChipSeq; cell=H1-hESC; antibody=H3K4me1; control=std; expId=106; setType=exp; controlId=H1-hESC/Input/std; subId=2796; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-11-05; grant=Bernstein; lab=Broad; view=Signal; type=bigWig; dccAccession=wgEncodeEH000106; origAssembly=hg18
      2010-09-16wgEncodeBroadHistoneHsmmH3k4me1StdSig.bigWig  330M  2009-12-16  dataType=ChipSeq; cell=HSMM; antibody=H3K4me1; control=std; expId=114; setType=exp; controlId=HSMM/Input/std; subId=2844; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-11-05; grant=Bernstein; lab=Broad; view=Signal; type=bigWig; dccAccession=wgEncodeEH000114; origAssembly=hg18
      2009-10-05wgEncodeBroadHistoneHuvecH3k4me1StdSig.bigWig  345M  2009-01-05  dataType=ChipSeq; cell=HUVEC; antibody=H3K4me1; control=std; expId=39; setType=exp; controlId=HUVEC/Input/std; subId=2876; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-11-05; grant=Bernstein; lab=Broad; view=Signal; type=bigWig; dccAccession=wgEncodeEH000039; origAssembly=hg18
      2009-10-05wgEncodeBroadHistoneK562H3k4me1StdSig.bigWig  355M  2009-01-05  dataType=ChipSeq; cell=K562; antibody=H3K4me1; control=std; expId=46; setType=exp; controlId=K562/Input/std; subId=2888; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-11-05; grant=Bernstein; lab=Broad; view=Signal; type=bigWig; dccAccession=wgEncodeEH000046; origAssembly=hg18
      2009-10-06wgEncodeBroadHistoneNhekH3k4me1StdSig.bigWig  301M  2009-01-06  dataType=ChipSeq; cell=NHEK; antibody=H3K4me1; control=std; expId=62; setType=exp; controlId=NHEK/Input/std; subId=2907; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-11-05; grant=Bernstein; lab=Broad; view=Signal; type=bigWig; dccAccession=wgEncodeEH000062; origAssembly=hg18
      2010-06-28wgEncodeBroadHistoneNhlfH3k4me1StdSig.bigWig  340M  2009-09-29  dataType=ChipSeq; cell=NHLF; antibody=H3K4me1; control=std; expId=100; setType=exp; controlId=NHLF/Input/std; subId=2919; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-11-05; grant=Bernstein; lab=Broad; view=Signal; type=bigWig; dccAccession=wgEncodeEH000100; origAssembly=hg18
    7 files