[DIR] Parent Directory

This directory contains data generated by the Bernstein/Broad lab as part of the ENCODE project.

This directory contains the subset of the Broad ChIP-seq signal tracks used in the ENCODE Integrated Regulation Tracks

Further information is available in the ENCODE Histone Modifications by Broad Institute ChIP-seq track description.

Data is RESTRICTED FROM USE in publication until the restriction date noted for the given data file.

There are two files within this directory that contain information about the downloads:
  • files.txt which is a tab-separated file with the name and metadata for each download.
  • md5sum.txt which is a list of the md5sum output for each download.
    • RESTRICTED
    until    		  FileSizeSubmitted  Details
      2009-10-05wgEncodeBroadHistoneGm12878H3k27acStdSig.bigWig  250M  2009-01-05  dataType=ChipSeq; cell=GM12878; antibody=H3K27ac; control=std; expId=30; setType=exp; controlId=GM12878/Input/std; subId=2801; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-11-05; grant=Bernstein; lab=Broad; view=Signal; type=bigWig; dccAccession=wgEncodeEH000030; origAssembly=hg18
      2011-03-21wgEncodeBroadHistoneH1hescH3k27acStdSig.bigWig  652M  2010-06-21  dataType=ChipSeq; cell=H1-hESC; antibody=H3K27ac; control=std; expId=997; setType=exp; controlId=H1-hESC/Input/std; subId=2811; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-11-05; grant=Bernstein; lab=Broad; view=Signal; type=bigWig; dccAccession=wgEncodeEH000997; origAssembly=hg19
      2010-09-16wgEncodeBroadHistoneHsmmH3k27acStdSig.bigWig  307M  2009-12-16  dataType=ChipSeq; cell=HSMM; antibody=H3K27ac; control=std; expId=111; setType=exp; controlId=HSMM/Input/std; subId=2841; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-11-05; grant=Bernstein; lab=Broad; view=Signal; type=bigWig; dccAccession=wgEncodeEH000111; origAssembly=hg18
      2009-10-06wgEncodeBroadHistoneHuvecH3k27acStdSig.bigWig  296M  2009-01-06  dataType=ChipSeq; cell=HUVEC; antibody=H3K27ac; control=std; expId=55; setType=exp; controlId=HUVEC/Input/std; subId=2874; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-11-05; grant=Bernstein; lab=Broad; view=Signal; type=bigWig; dccAccession=wgEncodeEH000055; origAssembly=hg18
      2009-10-05wgEncodeBroadHistoneK562H3k27acStdSig.bigWig  293M  2009-01-05  dataType=ChipSeq; cell=K562; antibody=H3K27ac; control=std; expId=43; setType=exp; controlId=K562/Input/std; subId=2885; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-11-05; grant=Bernstein; lab=Broad; view=Signal; type=bigWig; dccAccession=wgEncodeEH000043; origAssembly=hg18
      2009-10-07wgEncodeBroadHistoneNhekH3k27acStdSig.bigWig  280M  2009-01-07  dataType=ChipSeq; cell=NHEK; antibody=H3K27ac; control=std; expId=64; setType=exp; controlId=NHEK/Input/std; subId=2904; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-11-05; grant=Bernstein; lab=Broad; view=Signal; type=bigWig; dccAccession=wgEncodeEH000064; origAssembly=hg18
      2010-06-28wgEncodeBroadHistoneNhlfH3k27acStdSig.bigWig  259M  2009-09-29  dataType=ChipSeq; cell=NHLF; antibody=H3K27ac; control=std; expId=97; setType=exp; controlId=NHLF/Input/std; subId=2916; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-11-05; grant=Bernstein; lab=Broad; view=Signal; type=bigWig; dccAccession=wgEncodeEH000097; origAssembly=hg18
    7 files