This directory contains zipped multiple alignments of the Chicken genome
(galGal2, Feb. 2004) to the following assemblies:
- Human May 2004 (hg17)
- Mouse May 2004 (mm5)
- Opossum Oct. 2004 (monDom1)
- Frog Oct. 2004 (xenTro1)
- Zebrafish Jun. 2004 (danRer2)
- Tetraodon Feb. 2004 (tetNig1)
The chr*.maf.gz files each contain all the alignments to that
particular chicken chromosome.
For a description of the multiple alignment format (MAF),
see http://genome.ucsc.edu/goldenPath/help/maf.html.
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If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/galGal2/multiz7way/. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the files in this directory are freely available for public use.
For data restrictions regarding the aligned genomes, see
http://genome.ucsc.edu/goldenPath/credits.html .
Name Last modified Size Description
Parent Directory -
maf/ 2019-11-06 10:55 -
md5sum.txt 2005-04-27 11:02 2.5K
chrZ_random.maf.gz 2005-04-27 11:02 3.0M
chrZ.maf.gz 2005-04-27 11:02 5.9M
chrW_random.maf.gz 2005-04-27 11:02 49K
chrW.maf.gz 2005-04-27 11:02 1.3M
chrUn.maf.gz 2005-04-27 11:02 32M
chrM.maf.gz 2005-04-27 11:01 36K
chrE64.maf.gz 2005-04-27 11:01 2.1K
chrE50C23.maf.gz 2005-04-27 11:01 10K
chrE26C13.maf.gz 2005-04-27 11:01 148K
chrE22C19W28.maf.gz 2005-04-27 11:01 36K
chr9.maf.gz 2005-04-27 11:01 5.9M
chr8.maf.gz 2005-04-27 11:01 8.2M
chr7_random.maf.gz 2005-04-27 11:01 2.7K
chr7.maf.gz 2005-04-27 11:01 10M
chr6_random.maf.gz 2005-04-27 11:01 534
chr6.maf.gz 2005-04-27 11:01 7.7M
chr5_random.maf.gz 2005-04-27 11:01 14K
chr5.maf.gz 2005-04-27 11:01 13M
chr4_random.maf.gz 2005-04-27 11:01 197K
chr4.maf.gz 2005-04-27 11:01 18M
chr3_random.maf.gz 2005-04-27 11:00 928K
chr32_random.maf.gz 2005-04-27 11:00 4.3K
chr32.maf.gz 2005-04-27 11:00 574K
chr3.maf.gz 2005-04-27 11:00 22M
chr28_random.maf.gz 2005-04-27 11:00 14K
chr28.maf.gz 2005-04-27 11:00 1.9M
chr2_random.maf.gz 2005-04-27 11:00 23K
chr27_random.maf.gz 2005-04-27 11:00 606K
chr27.maf.gz 2005-04-27 11:00 911K
chr26.maf.gz 2005-04-27 11:00 1.6M
chr24_random.maf.gz 2005-04-27 11:00 46K
chr24.maf.gz 2005-04-27 11:00 2.1M
chr23.maf.gz 2005-04-27 11:00 2.0M
chr22.maf.gz 2005-04-27 11:00 478K
chr21.maf.gz 2005-04-27 11:00 2.5M
chr20.maf.gz 2005-04-27 11:00 3.9M
chr2.maf.gz 2005-04-27 11:00 27M
chr1_random.maf.gz 2005-04-27 10:59 248K
chr19.maf.gz 2005-04-27 10:59 3.6M
chr18.maf.gz 2005-04-27 10:59 2.7M
chr17.maf.gz 2005-04-27 10:59 3.5M
chr16_random.maf.gz 2005-04-27 10:59 97K
chr16.maf.gz 2005-04-27 10:59 141K
chr15.maf.gz 2005-04-27 10:59 4.0M
chr14.maf.gz 2005-04-27 10:59 5.8M
chr13_random.maf.gz 2005-04-27 10:59 397K
chr13.maf.gz 2005-04-27 10:59 4.4M
chr12.maf.gz 2005-04-27 10:59 5.0M
chr11_random.maf.gz 2005-04-27 10:59 643K
chr11.maf.gz 2005-04-27 10:59 5.3M
chr10_random.maf.gz 2005-04-27 10:59 668K
chr10.maf.gz 2005-04-27 10:59 6.2M
chr1.maf.gz 2005-04-27 10:59 34M